Srinagar:
By far the biggest Collection 6000+:
Oriental Research Library, Srinagar ( housed in Allama Iqbal Library, Kashmir University, Srinagar premises).
https://archive.org/details/CatalogOfManuscriptsDeptOfLibrariesAndResearchJKDept
and alternate compilation
http://ignca.gov.in/mss/JK_ORL_Srinagar_Sanskrit.pdf
Pratap Singh Public Library, Srinagar (72 Items)
http://ignca.nic.in/mss/mss_shri_pratap_singh_library_srinagar.xml
Interesting Items:
42 Mali-Niya Shaloka ( possibly Malini Shloka Vartika, मालिनी श्लोक वार्तिक )
53 Satantara Deepika ( स्वातन्त्त्र्य दीपिका , Swatantrya Deepika)
21 Isharapriti Bigna(ईश्वर प्रात्याभिज्ञा, Ishvar Pratyabhijna)
JK Culture Academy, Srinagar( less than 10 Sharada Manuscripts)
In Urdu – in a Book Format
https://archive.org/details/JKCultureAcademySrinagarManuscriptCatalogInUrduI
https://archive.org/details/JKCultureAcademySrinagarManuscriptCatalogInUrduII
And Also In English:
http://jkculture.nic.in/pdf/MANUSCRIPT.pdf
Pratap Singh Museum (2000+):
Catalog Not Available to Public Yet , never published ( but all Manuscripts have been digitized by NMM)
( RTI Activists/Culture Vultures a job awaiting you )
JK Archives, Srinagar( less than 1000, mixed Sharada, Perso-Arabic from personal memory of fleeting glances at there Register)
Catalog Not Available to Public Yet , never digitized, never published( RTI Activists/Culture Vultures a job awaiting you )
Jammu
Dogra Art Museum
https://archive.org/details/DograArtMuseumJammuCatalog
JK Archives, Jammu
Catalog Not Available
Raghunath Temple( Less than 50 Sharada Manuscrips)
Compiled thrice:
Stein:
https://archive.org/details/JammuKashmirSteinManuscriptInRaghunathaTempleOfMaharaja
Patkar and Mishra:
https://archive.org/details/DescriptiveCatalogOfSanskritManuscriptsInSriRanbirSanskritResearchInsituteJammuVolumeIM.M.Patkar.pdf
IGNCA:
https://archive.org/details/IGNCACatalogShriRanbirSanskritResearchInstitute
http://ignca.gov.in/mss/JK_Shri_Ranbir_Sanskrit_Research_Institute.pdf
or :
http://ignca.gov.in/mss/JK_Shri_Ranbir_Sanskrit_Research_Institute.pdf
Excel:
Shri_Ranbir_Sanskrit_Research_Institute_Jammu_RS Step -3
Chandigarh
DAV College, Chandigarh ( All Digitized never put online)
http://list.indology.info/pipermail/indology_list.indology.info/2000-November/024175.html
A High End Re-Digitization limited to 6000-ish Laminated Devanagari Texts by Lohia Foundation and publicly available:
http://dav.splrarebooks.com
Punjab University, Chandigarh Manuscript Repository
No Catalog ever published(recently catalogued by NMM) besides Old Register. Almira-1 Shelf-2 has Sharada Manuscripts:
https://archive.org/details/@panjab_university_collection?and%5B%5D=sharada
Catalog:
https://archive.org/details/PunjabUniversityManuscriptsCatalog
Hoshiarpur
Note: The Hoshiarpur Campus aka Sadhu Ashram hosts two institutions. A Punjab University affiliated College which is VVBISIS and a separate Research Institute the VVRI.
VVRI, Sadhu Ashram Hoshiarpur
Partial:
http://wujastyk.net/mscats/Sanskrit_Catalogues/Biswas%200383%20Hoshiarpur%20VVRI/Vishva%20Bandhu_Hoshiarpur%20Catalogue%20v.1_1959%20to%20page%20205%20only.pdf
VVRI Manuscripts if I understand correctly have all been transferred to DAV College,Chandigarh. Consult the Lal Chand Research Lib Catalog – the VVRI must be a subset of all entries in Lal Chand.
VVBISIS, , Sadhu Ashram Hoshiarpur
Lucknow:
UPSS
Catalog:
https://archive.org/details/CatalogOfManuscriptsAtUPSSLucknowDr.SacchidaanandPathak
Digitized Manuscripts:
https://archive.org/details/@upss_manuscripts?&and[]=subject%3A”Sharada%20Manuscripts”
Delhi
National Archives Collection – 1 ( Marked Under Serial No 260 and duplicated with 363 – Originally from Maharaja Hari Singh’s Library )
National Archives Collection – 2 ( Identified by Serial Number 128 )
Contains 4 Independent Collections:
4. Tibetan Manuscripts of Rajgarh Library 23 Items
https://archive.org/details/ListOfManuscriptsOfArchaeologyDeptJKAtNationalArchives
National Archives Collection -3 ( Oriental Records Room)
Another Online Catalog
National Museum, Delhi (459 Sharada Manuscripts)
Partial:
http://ignca.nic.in/mss/ND_National_Museum_sanskrit.pdf
and
http://museumsofindia.gov.in/repository/search/nat_del/collection/object_type/manuscript/0/1/50
Lahore:
Punjab University, Lahore
https://archive.org/details/PunjabUniversityLahoreCatalogOfSanskritManuscripts https://archive.org/details/PunjabUniversityLahoreCatalogOfSanskritManuscriptsVol2
Varanasi:
Sampurnananda Uni, Sarawati Mahal Library, Varanasi
https://archive.org/details/SarawatiBhavanLibraryManuscriptListIGNCA
Scindia ORL, Ujjain,MP
49 Sharada Items
http://ignca.gov.in/mss/MP_Scindia_ORI_Vikram_Univ_Ujjain.pdf
This includes an Ishvar Pratyabhijna Vivritti Vimarshini under 262, 4503
And Four Other Pratyabhijna Items under:
266 4591, 4697/2 , 4697, 4450/1
Three Paratrimshika Items:
266 4702 /2 1
244 4483/1
244 4483/2
IGNCA recently put up a Physcial List of Sharada Manuscripts they have cataloged or digitized. RORI Jodhpur was there
This RORI, Jodhpur Catalog – maybe outdated – though doesnt list any Sharada manuscripts:
http://ignca.gov.in/mss/Rajasthan_Oriental_Research_Inst_Jodhpur.pdf
Others:
https://archive.org/details/NationalManuscriptMission
Kashmir University, Srinagar
eGangotri Digital Preservation Trust 